PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr013706.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 520aa    MW: 58310.2 Da    PI: 6.6811
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr013706.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.61.5e-10326371454
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  +h e+Er+RR+++N++f  Lr+++P+       K++ ++ L  Av YI++L
  Pbr013706.1 326 NHVEAERQRREKLNHRFYVLRSVVPNV-----SKMDRSSLLADAVLYINEL 371
                  799***********************6.....5***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.8E-3922219IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000839.88E-13320376No hitNo description
PROSITE profilePS5088815.542322371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.16E-16325388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-8326371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-16326387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.1E-14328377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MEEIISSCSP PTFCKETSFT FQQRLQFIVQ NRSEWWVYSI FWQASKGSIS DQVSLSWAGG  60
HFWNTHDHLA SKRSSGVINS YQPKFGFSNG ERSKVINREV EDLLHDDMVD LDMRLVDRED  120
VTDSEWFYFY TLSLTQSFSA SQGNNSKNIV GRAFGSGGFV WLAGDHDFQF YECERVKEAR  180
MHGIQTLVCI ATPFGVLELA SLDVIKEDWG LVHLSKSLFG LDGNINMNNN NKKKLSKQQT  240
TRDGNVLVPI LENGLFSAAQ KELIRQDQGG SKNEDAPINL GESSPETPSA SVGNLTTENT  300
ENMTRLKKRG RSSNHGAASR ELQLLNHVEA ERQRREKLNH RFYVLRSVVP NVSKMDRSSL  360
LADAVLYINE LKSKVEELEA KVQEQTQKPK AGNNANNNLD HHSSQSTSSI VDQHHYSYYN  420
ISNNSNSNNN SNSDRAAAAA VEVDVKIMGA DVIIRVQCPD EDYPYVKLMN ALKGLGLQVY  480
HASISSVKEL MVQDVVARLP YGFTGKEALR NGIMKGWYS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-21112192192Transcription factor MYC3
4rqw_B1e-21112192192Transcription factor MYC3
4rs9_A1e-21112192192Transcription factor MYC3
4yz6_A1e-21112192192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1305311LKKRGRS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009370919.10.0PREDICTED: transcription factor MYC2-like
TrEMBLM5W8H30.0M5W8H3_PRUPE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.13e-65bHLH family protein